Publications

Rónán Daly and Qiang Shen. Learning Bayesian Network Equivalence Classes with Ant Colony Optimization. Journal of Artificial Intelligence Research, 35:391–447, 2009.

Rónán Daly, Kieron D. Edwards, John S. O’Neill, Stuart Aitken, Andrew J. Millar and Mark Girolami. Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana. In Proceedings of the Fourth IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2009), volume 5780 of Lecture Notes in Bioinformatics, pages 67–78, 2011.

Rónán Daly, Qiang Shen and Stuart Aitken Learning Bayesian networks: approaches and issues. The Knowledge Engineering Review, 26(2):99–157, 2011.

Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess and Rainer Breitling. MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach. Bioinformatics, 2014.

Meesbah Jiwaji, Rónán Daly, Kshama Pansare, Pauline McLean, Jingli Yang, Walter Kolch and Andrew R. Pitt The Renilla luciferase gene as a reference gene for normalization of gene expression in transiently transfected cells. BMC Molecular Biology, 11(103), 2010.

Meesbah Jiwaji, Rónán Daly, Abdullah Gibriel, Gráinne Barkess, Pauline McLean, Jingli Yang, Kshama Pansare, Sarah Cumming, Alisha McLauchlan, Piotr J. Kamola, Musab S. Bhutta, Adam G. West, Katherine L. West, Walter Kolch, Mark A. Girolami and Andrew R. Pitt. Unique Reporter-Based Sensor Platforms to Monitor Signalling in Cells. PLOS ONE, 7(11):e50521, 2012.

Meesbah Jiwaji, Mairi E Sandison, Julien Reboud, Ross Stevenson, Rónán Daly, Gráinne Barkess, Karen Faulds, Walter Kolch, Duncan Graham, Mark A Girolami, Jonathan M Cooper, Andrew R Pitt. Quantification of Functionalised Gold Nanoparticle-Targeted Knockdown of Gene Expression in HeLa Cells. PLOS ONE, 9(6):e99458, 2014.

Simon Rogers, Rónán Daly and Rainer Breitling. Mixture Model Clustering for Peak Filtering in Metabolomics. In Proceedings of the Ninth International Workshop on Computational Systems Biology, pages 71–74, 2012.